The serial-parallel summation method

Primary authors of this description: A.V.Frolov, Vad.V.Voevodin (Section 2.2), A.M.Teplov (раздел Section 2.4)

1 Properties and structure of the algorithm

1.1 General description of the algorithm

The serial-parallel method is used as a substitute for the block implementation of calculating long sequences of associative operations (for instance, mass summations). The method became popular due to the following features: a) it realizes the conversion of single cycles into double ones; b) on serial computers and for certain operations, the method was able to reduce the impact of round-off errors at the results. Here, we describe its version for summing numbers.

1.2 Mathematical description of the algorithm

Input data: one-dimensional array of [math]N[/math] numbers.

Output data: sum of the array's elements.

Formulas of the method: the integer [math]N[/math] is represented as [math]N = (p - 1) k + q[/math], where [math]p[/math] is the number of processors, [math]k = \lceil \frac{N}{p} \rceil[/math], and [math]q = N - k (p - 1)[/math].

Then the [math]i[/math]-th processor (where [math]i \lt p[/math]) calculates, in a serial mode, the sum of array elements with the indices ranging from [math](i - 1) k + 1[/math] to [math]i k[/math].

[math]S_i = \sum_{j = 1}^k x_{k (i - 1) + j}[/math]

The [math]p[/math]-th processor calculates, in a serial mode, the sum of array elements with the indices ranging from [math](p - 1) k + 1[/math] to [math](p - 1) k + q[/math].

[math]S_p = \sum_{j = 1}^q x_{k (p - 1) + j}[/math]

When this process is completed, the processors exchange their data, and one of them (or each of them if the result is later needed to all the processors) adds the partial sums in a serial mode.

[math]\sum_{i = 1}^p S_i[/math]

1.3 Computational kernel of the algorithm

The computational kernel of the serial-parallel summation method can be compiled from multiple calculations of partial sums (altogether [math]p[/math] calculations)

[math]S_i = \sum_{j = 1}^k x_{k (i - 1) + j}[/math]

plus the addition of these partial sums

[math]\sum_{i = 1}^p S_i[/math]

1.4 Macro structure of the algorithm

As already noted in the description of the computational kernel, the basic part of the method is compiled of multiple calculations (altogether [math]p + 1[/math] calculations) of the sums

[math]S_i = \sum_{j = 1}^k x_{k (i - 1) + j}[/math] and

[math]\sum_{i = 1}^p S_i[/math]

1.5 Implementation scheme of the serial algorithm

The formulas of the method are given above. The summations can be performed in different ways, with indices of the summands either increasing or decreasing. When no special reasons for reordering are present, the natural order (i.e., increasing indices) is usually used.

1.6 Serial complexity of the algorithm

Let an array of [math]N[/math] elements must be summed. Various decompositions of [math]N[/math] differ from each other merely by arrangements of parentheses in the summation formula. The number of operations is the same for all the arrangements and is equal to [math]N - 1[/math]. Therefore, in terms of the number of serial operations, the method should be regarded as a linear complexity algorithm.

1.7 Information graph

The algorithm graph is shown in fig.1 in the case where an array of size 24 is summed.

Figure 1. The serial-parallel summation method

Interactive representation of the algorithm graph in the case where an array of size 24 is summed. No input and output data are shown.

[[Media:Media:Example.ogg]]

1.8 Parallelization resource of the algorithm

In order to sum an array of size [math]n[/math] by using the serial-parallel summation method in a parallel mode, the following layers must be performed:

• [math]k - 1[/math] layers for the summation of parts of the array ([math]p[/math] branches),
• [math]p - 1[/math] summation layers (a single serial branch).

Thus, in the parallel version, the critical path of the algorithm (and the corresponding height of the parallel form) depends on the chosen splitting of the array. In the optimal case ([math]p = \sqrt{n}[/math]), the height of the parallel form is [math]2 \sqrt{n} - 2[/math].

Consequently, in terms of the parallel form height, the serial-parallel summation method is qualified as an algorithm of the square root complexity. In terms of the parallel form width, it also has the square root complexity.

1.9 Input and output data of the algorithm

Input data: array [math]\vec{x}[/math] (with elements [math]x_i[/math]).

Further restrictions: none.

Size of the input data: [math]N[/math].

Output data: sum of the array's elements.

Size of the output data: single scalar.

1.10 Properties of the algorithm

It is clearly seen that, in the case of unlimited resources, the ratio of the serial to parallel complexity has the square root order (the ratio of the linear to square root complexity). The computational power of the algorithm, understood as the ratio of the number of operations to the total size of the input and output data, is only 1 (the size of the input and output data is equal to the number of operations). The algorithm is not completely determined because the partial summations can be organized in different ways. Choosing the order of performing associative operations in accordance with the peculiarities of the input data may reduce the impact of round-off errors at the result. The edges of the information graph are local.

2 Software implementation of the algorithm

2.1 Implementation peculiarities of the serial algorithm

The simplest variant (with no order of summation changed) can be written in Fortran as follows:

	DO  I = 1, P
		S (I) = X(K*(I-1)+1)
		IF (I.LQ.P) THEN
			DO J = 2,K
				S(I)=S(I)+X(K*(I-1)+J)
		             END DO
		ELSE
			DO J = 2,Q
				S(I)=S(I)+X(K*(I-1)+J)
		             END DO
		END IF
	END DO
	SUM = S(1)
	DO I = 2, P
		SUM = SUM + S(I)
	END DO

One can also write a similar scheme with the summations performed in the reverse order. We emphasize that, for both schemes, the algorithm graph is the same!

2.2 Locality of data and computations

2.2.1 Locality of implementation

2.2.1.1 Structure of memory access and a qualitative estimation of locality

Рисунок 2. Summing the elements of an array. Overall memory address profile

Fig.2 shows the memory address profile for summing the elements of an array. This profile consists of accesses to two arrays; the fragments for individual arrays are highlighted in green in Fig.2. Since we discuss the serial implementation of the serial-parallel summation method, the profile structure is practically independent of the number of branches chosen – only the number of elements involved in fragment 1 will be different.

Fragment 2 has a very simple structure; it represents a serial search of all array elements. Fragment 1 consists of two identical serial searches of all array elements. This is clearly seen in Fig.3, which gives a separate picture of this fragment.

Figure 3. Fragment 1 (first array address profile)

This fragment is characterized by high spatial locality and low temporal locality since practically no repeated calls to elements are done.

2.2.1.2 Quantitative estimation of locality

The main implementation fragment, which is used in all quantitative assessments, is shown here [1](KernelOpSeqpar function). Launch conditions are described here [2].

The first estimate is based on daps, which assesses the number of memory access operations (reads and writes) per second. Similar to flops, daps is used to evaluate memory access performance rather than locality. Yet, it is a good source of information, particularly for comparison with the results provided by the next estimate cvg.

Fig.4 shows daps values for implementations of popular algorithms, sorted in ascending order (the higher the daps, the better the performance in general). It is seen that these values are sufficiently high, and they are close to those for the serial-parallel dot product of two vectors. This is not surprising because both procedures execute operations of the same type.

Figure 4. Comparison of daps values

The second tool – cvg – is intended for obtaining a more machine-independent locality assessment. It determines how often a program needs to pull data to cache memory. Accordingly, the smaller the cvg value, the less frequently data need to be called to cache, and the better the locality.

Fig.5 shows the cvg values for the same set of implementations sorted in descending order (the smaller the cvg, the higher the locality in general). One can see that, according to this assessment, the locality profile is sufficiently high, which correlates with the daps values.

Figure 5. Comparison of cvg values

2.4 Scalability of the algorithm and its implementations

2.4.2 Scalability of of the algorithm implementation

Figure 6. Parallel implementation of summing the array elements, maximum performance.

Figure 7. Parallel implementation of summing the array elements, maximum efficiency.

Variable parameters for the launch of the algorithm implementation and the limits of parameter variations:

• number of processors [2 : 256]
• vector size [80000000:320000000]

Efficiency of the algorithm implementation

• Minimum efficiency 0,00004%
• Maximum efficiency 0,0037%

Scalability assessment

• By the number of processes: -9.432e-07 – as the number of processes increases, the efficiency is reduced within the given range for the launch parameters. But overall, the reduction is not very intensive. This is explained by the fact that an increase in the number of processors entails a strong increase of the costs for the organization of the doubling scheme for summation. However, the overall efficiency is only fractions of percentage; consequently, the intensity is only strong when, instead of the processes within a single physical node, we consider the use of a communication network. For the other values of the launch parameters, the efficiency is close to zero because an extremely small fraction of the overall calculation falls on each single process. Most of the productive time is taken by the organization of the processes .
• By the size of a problem: 1.881e-06 – as the size of the problem increases, the overall efficiency increases very slightly within the region under discussion. This is explained by an overall increase in the computational complexity of the problem due to increasing dimensionality. However, the computational complexity of the algorithm, equal to [math](N-1)[/math], does not allow to significantly increase the portion of time spent on calculations.
• По двум направлениям: -1.423e-07 – при рассмотрении увеличения как вычислительной сложности, так и числа процессов по всей рассмотренной области значений эффективность уменьшается, однако интенсивность уменьшения эффективности небольшая. В совокупности с тем фактом, что разница между максимальной и минимальной эффективностью на рассмотренной области значений параметров несущественная говорит о том, что на поверхности присутствуют области с очень интенсивным изменением эффективности на участке 2-16 процессов, но очень малые по площади. На остальной поверхности изменения эффективности незначительны и находятся на приблизительно одном и том же уровне.

Исследованная реализация алгоритма на языке C

2.7 Existing implementations of the algorithm

In its pure form, the serial-parallel method for summation an array is rarely used. Usually, modifications of this method are met in practice. They are designed for calculating the dot product (in which case, products of the elements of two arrays are summed rather than the elements of a single array) or the uniform norm (instead of the elements of an array, their moduli are summed), etc. The method is applied in the BLAS library for calculating the dot product in a particular case (where one of the dimensions is 5); however, the aim apparently was not a parallelization but an optimization of functioning the processor registers. Meanwhile, partitions of an array for calculating partial sums may be useful for better using the cache at individual nodes.